hdf5_module.f90 File Reference

Go to the source code of this file.

Modules
module	hdf5_module
	Module that contains necessary subroutines to write abundances to an hdf5 file.

Functions/Subroutines
subroutine, public	hdf5_module::init_hdf5_module ()
	Initialize the hdf5 module. More...
subroutine, private	hdf5_module::init_flow
	Initialize the flow output. More...
subroutine, private	hdf5_module::init_nu_loss_gain
	Initialize neutrino loss/gain output. More...
subroutine, public	hdf5_module::extend_nu_loss_gain (time, temp, dens, rad, the, heat, bet)
	Write neutrino gain and loss. More...
subroutine, private	hdf5_module::write_nu_loss_gain
	Write the neutrino loss/gain into the hdf5 file. More...
subroutine, private	hdf5_module::init_engen (include_decay)
	Initialize energy generation output. More...
subroutine, public	hdf5_module::extend_engen (time, engen_tot, heat, engen_ng_gn, engen_pg_gp, engen_ag_ga, engen_np_pn, engen_an_na, engen_ap_pa, engen_beta, engen_fiss, det_bet_engen, det_ag_engen, det_pg_engen, det_ng_engen, det_pn_engen, det_ap_engen, det_an_engen, det_other_engen, det_fiss_engen, det_tot_engen, include_decay)
	Subroutine to write the energy generation per reaction type. More...
subroutine, private	hdf5_module::write_engen (include_decay)
	Write energy generations and time into the hdf5 file. More...
subroutine, public	hdf5_module::extend_flow (time, temp, dens, flow, n_flows, Y)
	Extend the flow in the file With every call a new group is created and the flows are written in this group. The group is named after the calls (the third call is then located in flows/3) More...
subroutine, private	hdf5_module::init_snaps
	Initialize the snapshot hdf5 group. More...
subroutine, private	hdf5_module::init_mainout
	Initialize the mainout hdf5 group. More...
subroutine, private	hdf5_module::init_track_nuclei
	Initialize the tracked_nuclei hdf5 group. More...
subroutine, private	hdf5_module::init_av_timescales
	Initialize the timescales hdf5 group. More...
subroutine, private	hdf5_module::write_units ()
	Write the units of the individual entries into the hdf5 file. More...
subroutine, public	hdf5_module::write_finab (Y)
	Write final abundances into hdf5 file. More...
integer(hsize_t) function, private	hdf5_module::create_1d_dataset (dsetname, group_id)
	Gets a dataset name and creates it. More...
integer(hsize_t) function, private	hdf5_module::create_1d_int_dataset (dsetname, group_id)
	Gets a dataset name and creates an integer dataset. More...
subroutine, private	hdf5_module::create_constant_1d_int_arrays (length, data, dsetname, group_id)
	Create a hdf5 entry with constant values. More...
subroutine, private	hdf5_module::create_constant_1d_arrays (length, data, dsetname, group_id)
	Create a hdf5 entry with constant values. More...
subroutine, private	hdf5_module::extend_1d_dataset (dset_id, value, in_size, chunksize)
	Extend a previously created 1D - dataset. More...
subroutine, private	hdf5_module::extend_1d_int_dataset (dset_id, value, in_size, chunksize)
	Extend a previously created 1D integer - dataset. More...
subroutine, public	hdf5_module::extend_av_timescales (time, tau_ga, tau_ag, tau_ng, tau_gn, tau_pg, tau_gp, tau_np, tau_pn, tau_an, tau_na, tau_ap, tau_pa, tau_beta, tau_alpha, tau_nfiss, tau_sfiss, tau_bfiss)
	Subroutine to write the average timescales (1/s) into the hdf5. More...
subroutine, private	hdf5_module::write_av_timescales ()
	Write average timescales and time into the hdf5 file. More...
subroutine, public	hdf5_module::extend_track_nuclei (time, Y_array)
	Write tracked abundances and time into the hdf5 file. More...
subroutine, private	hdf5_module::write_track_data ()
	Write the abundances of track nuclei into a file. More...
subroutine, public	hdf5_module::extend_snaps (time, Y_array)
	Write abundances and time into the hdf5 file. More...
subroutine, private	hdf5_module::write_snaps ()
	Write the abundances of all nuclei into a file. More...
subroutine, public	hdf5_module::extend_mainout (cnt, time, temp, dens, entr, rad, Y)
	Write the mainout data to the hdf5. More...
subroutine, private	hdf5_module::write_mainout_data ()
	Write the mainout data into a file. More...
subroutine, private	hdf5_module::extend_hdf5_y (dset_id, Y_array, nr_nuc, old_size, chunksize)
	Extend the Y dataset for the net timestep. More...
subroutine, public	hdf5_module::hdf5_module_finalize ()
	Finalize the hdf5 module. More...

Variables
integer(hid_t), private	hdf5_module::file_id
	File identifier. More...
character(len=20), private	hdf5_module::hdf5_filename ="WinNet_data.h5"
	Name of the hdf5 file. More...
logical, private	hdf5_module::hdf5_output =.False.
character(len= *), parameter, private	hdf5_module::dsetname_u = "Units"
	Name of the units dataset. More...
integer(hsize_t), dimension(1), private	hdf5_module::dims_1d =(/1/)
	Helper variable to specify 1 dimension. More...
integer(hid_t), private	hdf5_module::dataspace
	Dataspace identifier. More...
integer(hid_t), private	hdf5_module::crp_list
	Dataset creation property identifier. More...
integer(hsize_t), dimension(1:2), private	hdf5_module::maxdims
	Maximum dimensions (later set to unlimited) More...
integer(hid_t), private	hdf5_module::snaps_group_id
	The ID of the group. More...
integer, private	hdf5_module::iter_snaps = 0
	Iteration count, how often was already extended to the datasets? More...
integer, private	hdf5_module::chunk_counter_snaps = 0
	How full is the chunk already? More...
integer, parameter, private	hdf5_module::chunk_size_snaps =200
	Chunk size. More...
real(r_kind), dimension(chunk_size_snaps), private	hdf5_module::chunk_store_snaps_time
	Storage for the chunk which is later written to the file. More...
real(r_kind), dimension(:,:), allocatable, private	hdf5_module::chunk_store_snaps_y
	Storage for the chunk which is later written to the file. More...
integer(hid_t), private	hdf5_module::dset_id_y
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::dsetname_y = "Y"
	Name of the dataset. More...
integer(hsize_t), dimension(1:2), private	hdf5_module::dims_y
	Array dimensions (net_size) More...
character(len= *), parameter, private	hdf5_module::snaps_dsetname_t = "time"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::snaps_dset_id_t
	Dataset identifier. More...
integer(hid_t), private	hdf5_module::mainout_group_id
	The ID of the group. More...
integer, private	hdf5_module::iter_mainout = 0
	Iteration count, how often was already extended to the datasets? More...
integer, private	hdf5_module::chunk_counter_mainout = 0
	How full is the chunk already? More...
integer, parameter, private	hdf5_module::chunk_size_mainout =500
	Chunk size. More...
real(r_kind), dimension(chunk_size_mainout, 13), private	hdf5_module::chunk_store_mainout
	Storage for the chunk which is later written to the file. More...
integer, dimension(chunk_size_mainout), private	hdf5_module::chunk_store_int_mainout
	Storage for integers in chunk which is later written to the file. More...
character(len= *), parameter, private	hdf5_module::mainout_dsetname_iter = "iteration"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::mainout_dset_id_iter
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::mainout_dsetname_t = "time"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::mainout_dset_id_t
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::mainout_dsetname_temp = "temp"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::mainout_dset_id_temp
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::mainout_dsetname_dens = "dens"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::mainout_dset_id_dens
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::mainout_dsetname_entr = "entr"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::mainout_dset_id_entr
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::mainout_dsetname_rad = "rad"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::mainout_dset_id_rad
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::mainout_dsetname_ye = "ye"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::mainout_dset_id_ye
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::mainout_dsetname_yn = "yn"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::mainout_dset_id_yn
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::mainout_dsetname_yp = "yp"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::mainout_dset_id_yp
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::mainout_dsetname_ya = "ya"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::mainout_dset_id_ya
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::mainout_dsetname_ylight = "ylight"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::mainout_dset_id_ylight
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::mainout_dsetname_yheavy = "yheavy"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::mainout_dset_id_yheavy
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::mainout_dsetname_abar = "abar"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::mainout_dset_id_abar
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::mainout_dsetname_zbar = "zbar"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::mainout_dset_id_zbar
	Dataset identifier. More...
integer(hid_t), private	hdf5_module::track_group_id
	The ID of the group. More...
integer, private	hdf5_module::iter_tracked = 0
	Iteration count, how often was already extended to the datasets? More...
integer, private	hdf5_module::chunk_counter_track = 0
	How full is the chunk already? More...
integer, parameter, private	hdf5_module::chunk_size_track =500
	Chunk size. More...
real(r_kind), dimension(:,:), allocatable, private	hdf5_module::chunk_store_track
	Temporary storage for tracked nuclei. More...
character(len= *), parameter, private	hdf5_module::tracked_dsetname_t = "time"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::tracked_dset_id_t
	Dataset identifier. More...
integer(hsize_t), dimension(1:2), private	hdf5_module::dims_track
	Array dimensions. More...
character(len=5), dimension(:), allocatable, private	hdf5_module::tracked_names
	Names of the tracked nuclei. More...
integer(hid_t), private	hdf5_module::tracked_abu_id
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::tracked_dsetname_y = "Y"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::ts_group_id
	The ID of the group. More...
integer, private	hdf5_module::iter_ts = 0
	Iteration count, how often was already extended to the datasets? More...
integer, private	hdf5_module::chunk_counter_ts = 0
	How full is the chunk already? More...
integer, parameter, private	hdf5_module::chunk_size_ts =500
	Chunk size. More...
real(r_kind), dimension(chunk_size_ts, 18), private	hdf5_module::chunk_store_ts
	Temporary storage for average timescales. More...
character(len= *), parameter, private	hdf5_module::ts_dsetname_t = "time"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::ts_dset_id_t
	Dataset identifier. More...
character(len=9), dimension(17), private	hdf5_module::ts_names = (/"tau_ga ","tau_ag ","tau_ng ","tau_gn ","tau_pg ","tau_gp ","tau_np ", "tau_pn ","tau_an ","tau_na ","tau_ap ","tau_pa ","tau_beta ","tau_alpha", "tau_nfiss","tau_sfiss","tau_bfiss"/)
	Names of the timescales. More...
integer(hid_t), dimension(17), private	hdf5_module::ts_reac_ids
	Dataset identifier. More...
integer(hid_t), private	hdf5_module::en_group_id
	The ID of the group. More...
integer, private	hdf5_module::iter_en = 0
	Iteration count, how often was already extended to the datasets? More...
integer, private	hdf5_module::chunk_counter_en = 0
	How full is the chunk already? More...
integer, parameter, private	hdf5_module::chunk_size_en =500
	Chunk size. More...
real(r_kind), dimension(chunk_size_en, 11), private	hdf5_module::chunk_store_en
	Temporary storage for energy generation. More...
real(r_kind), dimension(:,:), allocatable, private	hdf5_module::chunk_store_en_bet
real(r_kind), dimension(:,:), allocatable, private	hdf5_module::chunk_store_en_ag
real(r_kind), dimension(:,:), allocatable, private	hdf5_module::chunk_store_en_pg
real(r_kind), dimension(:,:), allocatable, private	hdf5_module::chunk_store_en_ng
real(r_kind), dimension(:,:), allocatable, private	hdf5_module::chunk_store_en_pn
real(r_kind), dimension(:,:), allocatable, private	hdf5_module::chunk_store_en_ap
real(r_kind), dimension(:,:), allocatable, private	hdf5_module::chunk_store_en_an
real(r_kind), dimension(:,:), allocatable, private	hdf5_module::chunk_store_en_other
real(r_kind), dimension(:,:), allocatable, private	hdf5_module::chunk_store_en_fiss
real(r_kind), dimension(:,:), allocatable, private	hdf5_module::chunk_store_en_tot
character(len= *), parameter, private	hdf5_module::en_dsetname_t = "time"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::en_dset_id_t
	Dataset identifier. More...
character(len=11), dimension(10), private	hdf5_module::en_names = (/"engen_tot ","S_src ","engen_ng_gn","engen_pg_gp","engen_ag_ga", "engen_np_pn","engen_an_na","engen_ap_pa","engen_beta ", "engen_fiss "/)
	Name of the energy generations. More...
integer(hid_t), dimension(10), private	hdf5_module::en_reac_ids
	Dataset identifier. More...
character(len=14), private	hdf5_module::en_det_bet_name ="detailed decay"
character(len=14), private	hdf5_module::en_det_ag_name ="detailed (a,g)"
character(len=14), private	hdf5_module::en_det_pg_name ="detailed (p,g)"
character(len=14), private	hdf5_module::en_det_ng_name ="detailed (n,g)"
character(len=14), private	hdf5_module::en_det_pn_name ="detailed (p,n)"
character(len=14), private	hdf5_module::en_det_ap_name ="detailed (a,p)"
character(len=14), private	hdf5_module::en_det_an_name ="detailed (a,n)"
character(len=14), private	hdf5_module::en_det_other_name ="detailed other"
character(len=14), private	hdf5_module::en_det_fiss_name ="detailed fiss "
character(len=14), private	hdf5_module::en_det_tot_name ="detailed total"
integer(hid_t), private	hdf5_module::en_det_bet_id
integer(hid_t), private	hdf5_module::en_det_ag_id
integer(hid_t), private	hdf5_module::en_det_pg_id
integer(hid_t), private	hdf5_module::en_det_ng_id
integer(hid_t), private	hdf5_module::en_det_pn_id
integer(hid_t), private	hdf5_module::en_det_ap_id
integer(hid_t), private	hdf5_module::en_det_an_id
integer(hid_t), private	hdf5_module::en_det_other_id
integer(hid_t), private	hdf5_module::en_det_fiss_id
integer(hid_t), private	hdf5_module::en_det_tot_id
integer(hid_t), private	hdf5_module::flow_group_id
	The ID of the group. More...
integer, private	hdf5_module::iter_flow = 0
	Iteration count, how often was already extended to the datasets? More...
character(len= *), parameter, private	hdf5_module::flow_dsetname_t = "time"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::flow_dset_id_t
	Dataset identifier. More...
integer(hid_t), private	hdf5_module::nuloss_group_id
	The ID of the group. More...
integer, private	hdf5_module::iter_nuloss = 0
	Iteration count, how often was already extended to the datasets? More...
integer, private	hdf5_module::chunk_counter_nuloss = 0
	How full is the chunk already? More...
integer, parameter, private	hdf5_module::chunk_size_nuloss =500
	Chunk size. More...
real(r_kind), dimension(chunk_size_nuloss), private	hdf5_module::chunk_store_nuloss_t
real(r_kind), dimension(chunk_size_nuloss), private	hdf5_module::chunk_store_nuloss_temp
real(r_kind), dimension(chunk_size_nuloss), private	hdf5_module::chunk_store_nuloss_dens
real(r_kind), dimension(chunk_size_nuloss), private	hdf5_module::chunk_store_nuloss_rad
real(r_kind), dimension(chunk_size_nuloss), private	hdf5_module::chunk_store_nuloss_nut
real(r_kind), dimension(chunk_size_nuloss), private	hdf5_module::chunk_store_nuloss_bet
real(r_kind), dimension(chunk_size_nuloss), private	hdf5_module::chunk_store_nuloss_the
real(r_kind), dimension(chunk_size_nuloss), private	hdf5_module::chunk_store_nuloss_heat
character(len= *), parameter, private	hdf5_module::nuloss_dsetname_t = "time"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::nuloss_dset_id_t
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::nuloss_dsetname_temp = "temp"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::nuloss_dset_id_temp
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::nuloss_dsetname_dens = "dens"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::nuloss_dset_id_dens
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::nuloss_dsetname_rad = "rad"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::nuloss_dset_id_rad
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::nuloss_dsetname_nut = "nu_total"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::nuloss_dset_id_nut
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::nuloss_dsetname_bet = "nu_beta"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::nuloss_dset_id_bet
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::nuloss_dsetname_the = "nu_thermal"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::nuloss_dset_id_the
	Dataset identifier. More...
character(len= *), parameter, private	hdf5_module::nuloss_dsetname_heat = "nu_heat"
	Name of the dataset. More...
integer(hid_t), private	hdf5_module::nuloss_dset_id_heat
	Dataset identifier. More...
integer(hid_t), private	hdf5_module::finab_group_id
	The ID of the group. More...

Detailed Description

The error file code for this file is W24. Contains the module hdf5_module.

Definition in file hdf5_module.f90.