Module that contains necessary subroutines to write abundances to an hdf5 file. More...

Functions/Subroutines
subroutine, public	init_hdf5_module ()
	Initialize the hdf5 module. More...

subroutine, private	init_flow
	Initialize the flow output. More...

subroutine, private	init_nu_loss_gain
	Initialize neutrino loss/gain output. More...

subroutine, public	extend_nu_loss_gain (time, temp, dens, rad, the, heat, bet)
	Write neutrino gain and loss. More...

subroutine, private	write_nu_loss_gain
	Write the neutrino loss/gain into the hdf5 file. More...

subroutine, private	init_engen (include_decay)
	Initialize energy generation output. More...

subroutine, public	extend_engen (time, engen_tot, heat, engen_ng_gn, engen_pg_gp, engen_ag_ga, engen_np_pn, engen_an_na, engen_ap_pa, engen_beta, engen_fiss, det_bet_engen, det_ag_engen, det_pg_engen, det_ng_engen, det_pn_engen, det_ap_engen, det_an_engen, det_other_engen, det_fiss_engen, det_tot_engen, include_decay)
	Subroutine to write the energy generation per reaction type. More...

subroutine, private	write_engen (include_decay)
	Write energy generations and time into the hdf5 file. More...

subroutine, public	extend_flow (time, temp, dens, flow, n_flows, Y)
	Extend the flow in the file With every call a new group is created and the flows are written in this group. The group is named after the calls (the third call is then located in flows/3) More...

subroutine, private	init_snaps
	Initialize the snapshot hdf5 group. More...

subroutine, private	init_mainout
	Initialize the mainout hdf5 group. More...

subroutine, private	init_track_nuclei
	Initialize the tracked_nuclei hdf5 group. More...

subroutine, private	init_av_timescales
	Initialize the timescales hdf5 group. More...

subroutine, private	write_units ()
	Write the units of the individual entries into the hdf5 file. More...

subroutine, public	write_finab (Y)
	Write final abundances into hdf5 file. More...

integer(hsize_t) function, private	create_1d_dataset (dsetname, group_id)
	Gets a dataset name and creates it. More...

integer(hsize_t) function, private	create_1d_int_dataset (dsetname, group_id)
	Gets a dataset name and creates an integer dataset. More...

subroutine, private	create_constant_1d_int_arrays (length, data, dsetname, group_id)
	Create a hdf5 entry with constant values. More...

subroutine, private	create_constant_1d_arrays (length, data, dsetname, group_id)
	Create a hdf5 entry with constant values. More...

subroutine, private	extend_1d_dataset (dset_id, value, in_size, chunksize)
	Extend a previously created 1D - dataset. More...

subroutine, private	extend_1d_int_dataset (dset_id, value, in_size, chunksize)
	Extend a previously created 1D integer - dataset. More...

subroutine, public	extend_av_timescales (time, tau_ga, tau_ag, tau_ng, tau_gn, tau_pg, tau_gp, tau_np, tau_pn, tau_an, tau_na, tau_ap, tau_pa, tau_beta, tau_alpha, tau_nfiss, tau_sfiss, tau_bfiss)
	Subroutine to write the average timescales (1/s) into the hdf5. More...

subroutine, private	write_av_timescales ()
	Write average timescales and time into the hdf5 file. More...

subroutine, public	extend_track_nuclei (time, Y_array)
	Write tracked abundances and time into the hdf5 file. More...

subroutine, private	write_track_data ()
	Write the abundances of track nuclei into a file. More...

subroutine, public	extend_snaps (time, Y_array)
	Write abundances and time into the hdf5 file. More...

subroutine, private	write_snaps ()
	Write the abundances of all nuclei into a file. More...

subroutine, public	extend_mainout (cnt, time, temp, dens, entr, rad, Y)
	Write the mainout data to the hdf5. More...

subroutine, private	write_mainout_data ()
	Write the mainout data into a file. More...

subroutine, private	extend_hdf5_y (dset_id, Y_array, nr_nuc, old_size, chunksize)
	Extend the Y dataset for the net timestep. More...

subroutine, public	hdf5_module_finalize ()
	Finalize the hdf5 module. More...

Variables
integer(hid_t), private	file_id
	File identifier. More...

character(len=20), private	hdf5_filename ="WinNet_data.h5"
	Name of the hdf5 file. More...

logical, private	hdf5_output =.False.

character(len= *), parameter, private	dsetname_u = "Units"
	Name of the units dataset. More...

integer(hsize_t), dimension(1), private	dims_1d =(/1/)
	Helper variable to specify 1 dimension. More...

integer(hid_t), private	dataspace
	Dataspace identifier. More...

integer(hid_t), private	crp_list
	Dataset creation property identifier. More...

integer(hsize_t), dimension(1:2), private	maxdims
	Maximum dimensions (later set to unlimited) More...

integer(hid_t), private	snaps_group_id
	The ID of the group. More...

integer, private	iter_snaps = 0
	Iteration count, how often was already extended to the datasets? More...

integer, private	chunk_counter_snaps = 0
	How full is the chunk already? More...

integer, parameter, private	chunk_size_snaps =200
	Chunk size. More...

real(r_kind), dimension(chunk_size_snaps), private	chunk_store_snaps_time
	Storage for the chunk which is later written to the file. More...

real(r_kind), dimension(:,:), allocatable, private	chunk_store_snaps_y
	Storage for the chunk which is later written to the file. More...

integer(hid_t), private	dset_id_y
	Dataset identifier. More...

character(len= *), parameter, private	dsetname_y = "Y"
	Name of the dataset. More...

integer(hsize_t), dimension(1:2), private	dims_y
	Array dimensions (net_size) More...

character(len= *), parameter, private	snaps_dsetname_t = "time"
	Name of the dataset. More...

integer(hid_t), private	snaps_dset_id_t
	Dataset identifier. More...

integer(hid_t), private	mainout_group_id
	The ID of the group. More...

integer, private	iter_mainout = 0
	Iteration count, how often was already extended to the datasets? More...

integer, private	chunk_counter_mainout = 0
	How full is the chunk already? More...

integer, parameter, private	chunk_size_mainout =500
	Chunk size. More...

real(r_kind), dimension(chunk_size_mainout, 13), private	chunk_store_mainout
	Storage for the chunk which is later written to the file. More...

integer, dimension(chunk_size_mainout), private	chunk_store_int_mainout
	Storage for integers in chunk which is later written to the file. More...

character(len= *), parameter, private	mainout_dsetname_iter = "iteration"
	Name of the dataset. More...

integer(hid_t), private	mainout_dset_id_iter
	Dataset identifier. More...

character(len= *), parameter, private	mainout_dsetname_t = "time"
	Name of the dataset. More...

integer(hid_t), private	mainout_dset_id_t
	Dataset identifier. More...

character(len= *), parameter, private	mainout_dsetname_temp = "temp"
	Name of the dataset. More...

integer(hid_t), private	mainout_dset_id_temp
	Dataset identifier. More...

character(len= *), parameter, private	mainout_dsetname_dens = "dens"
	Name of the dataset. More...

integer(hid_t), private	mainout_dset_id_dens
	Dataset identifier. More...

character(len= *), parameter, private	mainout_dsetname_entr = "entr"
	Name of the dataset. More...

integer(hid_t), private	mainout_dset_id_entr
	Dataset identifier. More...

character(len= *), parameter, private	mainout_dsetname_rad = "rad"
	Name of the dataset. More...

integer(hid_t), private	mainout_dset_id_rad
	Dataset identifier. More...

character(len= *), parameter, private	mainout_dsetname_ye = "ye"
	Name of the dataset. More...

integer(hid_t), private	mainout_dset_id_ye
	Dataset identifier. More...

character(len= *), parameter, private	mainout_dsetname_yn = "yn"
	Name of the dataset. More...

integer(hid_t), private	mainout_dset_id_yn
	Dataset identifier. More...

character(len= *), parameter, private	mainout_dsetname_yp = "yp"
	Name of the dataset. More...

integer(hid_t), private	mainout_dset_id_yp
	Dataset identifier. More...

character(len= *), parameter, private	mainout_dsetname_ya = "ya"
	Name of the dataset. More...

integer(hid_t), private	mainout_dset_id_ya
	Dataset identifier. More...

character(len= *), parameter, private	mainout_dsetname_ylight = "ylight"
	Name of the dataset. More...

integer(hid_t), private	mainout_dset_id_ylight
	Dataset identifier. More...

character(len= *), parameter, private	mainout_dsetname_yheavy = "yheavy"
	Name of the dataset. More...

integer(hid_t), private	mainout_dset_id_yheavy
	Dataset identifier. More...

character(len= *), parameter, private	mainout_dsetname_abar = "abar"
	Name of the dataset. More...

integer(hid_t), private	mainout_dset_id_abar
	Dataset identifier. More...

character(len= *), parameter, private	mainout_dsetname_zbar = "zbar"
	Name of the dataset. More...

integer(hid_t), private	mainout_dset_id_zbar
	Dataset identifier. More...

integer(hid_t), private	track_group_id
	The ID of the group. More...

integer, private	iter_tracked = 0
	Iteration count, how often was already extended to the datasets? More...

integer, private	chunk_counter_track = 0
	How full is the chunk already? More...

integer, parameter, private	chunk_size_track =500
	Chunk size. More...

real(r_kind), dimension(:,:), allocatable, private	chunk_store_track
	Temporary storage for tracked nuclei. More...

character(len= *), parameter, private	tracked_dsetname_t = "time"
	Name of the dataset. More...

integer(hid_t), private	tracked_dset_id_t
	Dataset identifier. More...

integer(hsize_t), dimension(1:2), private	dims_track
	Array dimensions. More...

character(len=5), dimension(:), allocatable, private	tracked_names
	Names of the tracked nuclei. More...

integer(hid_t), private	tracked_abu_id
	Dataset identifier. More...

character(len= *), parameter, private	tracked_dsetname_y = "Y"
	Name of the dataset. More...

integer(hid_t), private	ts_group_id
	The ID of the group. More...

integer, private	iter_ts = 0
	Iteration count, how often was already extended to the datasets? More...

integer, private	chunk_counter_ts = 0
	How full is the chunk already? More...

integer, parameter, private	chunk_size_ts =500
	Chunk size. More...

real(r_kind), dimension(chunk_size_ts, 18), private	chunk_store_ts
	Temporary storage for average timescales. More...

character(len= *), parameter, private	ts_dsetname_t = "time"
	Name of the dataset. More...

integer(hid_t), private	ts_dset_id_t
	Dataset identifier. More...

character(len=9), dimension(17), private	ts_names = (/"tau_ga ","tau_ag ","tau_ng ","tau_gn ","tau_pg ","tau_gp ","tau_np ", "tau_pn ","tau_an ","tau_na ","tau_ap ","tau_pa ","tau_beta ","tau_alpha", "tau_nfiss","tau_sfiss","tau_bfiss"/)
	Names of the timescales. More...

integer(hid_t), dimension(17), private	ts_reac_ids
	Dataset identifier. More...

integer(hid_t), private	en_group_id
	The ID of the group. More...

integer, private	iter_en = 0
	Iteration count, how often was already extended to the datasets? More...

integer, private	chunk_counter_en = 0
	How full is the chunk already? More...

integer, parameter, private	chunk_size_en =500
	Chunk size. More...

real(r_kind), dimension(chunk_size_en, 11), private	chunk_store_en
	Temporary storage for energy generation. More...

real(r_kind), dimension(:,:), allocatable, private	chunk_store_en_bet

real(r_kind), dimension(:,:), allocatable, private	chunk_store_en_ag

real(r_kind), dimension(:,:), allocatable, private	chunk_store_en_pg

real(r_kind), dimension(:,:), allocatable, private	chunk_store_en_ng

real(r_kind), dimension(:,:), allocatable, private	chunk_store_en_pn

real(r_kind), dimension(:,:), allocatable, private	chunk_store_en_ap

real(r_kind), dimension(:,:), allocatable, private	chunk_store_en_an

real(r_kind), dimension(:,:), allocatable, private	chunk_store_en_other

real(r_kind), dimension(:,:), allocatable, private	chunk_store_en_fiss

real(r_kind), dimension(:,:), allocatable, private	chunk_store_en_tot

character(len= *), parameter, private	en_dsetname_t = "time"
	Name of the dataset. More...

integer(hid_t), private	en_dset_id_t
	Dataset identifier. More...

character(len=11), dimension(10), private	en_names = (/"engen_tot ","S_src ","engen_ng_gn","engen_pg_gp","engen_ag_ga", "engen_np_pn","engen_an_na","engen_ap_pa","engen_beta ", "engen_fiss "/)
	Name of the energy generations. More...

integer(hid_t), dimension(10), private	en_reac_ids
	Dataset identifier. More...

character(len=14), private	en_det_bet_name ="detailed decay"

character(len=14), private	en_det_ag_name ="detailed (a,g)"

character(len=14), private	en_det_pg_name ="detailed (p,g)"

character(len=14), private	en_det_ng_name ="detailed (n,g)"

character(len=14), private	en_det_pn_name ="detailed (p,n)"

character(len=14), private	en_det_ap_name ="detailed (a,p)"

character(len=14), private	en_det_an_name ="detailed (a,n)"

character(len=14), private	en_det_other_name ="detailed other"

character(len=14), private	en_det_fiss_name ="detailed fiss "

character(len=14), private	en_det_tot_name ="detailed total"

integer(hid_t), private	en_det_bet_id

integer(hid_t), private	en_det_ag_id

integer(hid_t), private	en_det_pg_id

integer(hid_t), private	en_det_ng_id

integer(hid_t), private	en_det_pn_id

integer(hid_t), private	en_det_ap_id

integer(hid_t), private	en_det_an_id

integer(hid_t), private	en_det_other_id

integer(hid_t), private	en_det_fiss_id

integer(hid_t), private	en_det_tot_id

integer(hid_t), private	flow_group_id
	The ID of the group. More...

integer, private	iter_flow = 0
	Iteration count, how often was already extended to the datasets? More...

character(len= *), parameter, private	flow_dsetname_t = "time"
	Name of the dataset. More...

integer(hid_t), private	flow_dset_id_t
	Dataset identifier. More...

integer(hid_t), private	nuloss_group_id
	The ID of the group. More...

integer, private	iter_nuloss = 0
	Iteration count, how often was already extended to the datasets? More...

integer, private	chunk_counter_nuloss = 0
	How full is the chunk already? More...

integer, parameter, private	chunk_size_nuloss =500
	Chunk size. More...

real(r_kind), dimension(chunk_size_nuloss), private	chunk_store_nuloss_t

real(r_kind), dimension(chunk_size_nuloss), private	chunk_store_nuloss_temp

real(r_kind), dimension(chunk_size_nuloss), private	chunk_store_nuloss_dens

real(r_kind), dimension(chunk_size_nuloss), private	chunk_store_nuloss_rad

real(r_kind), dimension(chunk_size_nuloss), private	chunk_store_nuloss_nut

real(r_kind), dimension(chunk_size_nuloss), private	chunk_store_nuloss_bet

real(r_kind), dimension(chunk_size_nuloss), private	chunk_store_nuloss_the

real(r_kind), dimension(chunk_size_nuloss), private	chunk_store_nuloss_heat

character(len= *), parameter, private	nuloss_dsetname_t = "time"
	Name of the dataset. More...

integer(hid_t), private	nuloss_dset_id_t
	Dataset identifier. More...

character(len= *), parameter, private	nuloss_dsetname_temp = "temp"
	Name of the dataset. More...

integer(hid_t), private	nuloss_dset_id_temp
	Dataset identifier. More...

character(len= *), parameter, private	nuloss_dsetname_dens = "dens"
	Name of the dataset. More...

integer(hid_t), private	nuloss_dset_id_dens
	Dataset identifier. More...

character(len= *), parameter, private	nuloss_dsetname_rad = "rad"
	Name of the dataset. More...

integer(hid_t), private	nuloss_dset_id_rad
	Dataset identifier. More...

character(len= *), parameter, private	nuloss_dsetname_nut = "nu_total"
	Name of the dataset. More...

integer(hid_t), private	nuloss_dset_id_nut
	Dataset identifier. More...

character(len= *), parameter, private	nuloss_dsetname_bet = "nu_beta"
	Name of the dataset. More...

integer(hid_t), private	nuloss_dset_id_bet
	Dataset identifier. More...

character(len= *), parameter, private	nuloss_dsetname_the = "nu_thermal"
	Name of the dataset. More...

integer(hid_t), private	nuloss_dset_id_the
	Dataset identifier. More...

character(len= *), parameter, private	nuloss_dsetname_heat = "nu_heat"
	Name of the dataset. More...

integer(hid_t), private	nuloss_dset_id_heat
	Dataset identifier. More...

integer(hid_t), private	finab_group_id
	The ID of the group. More...

Detailed Description

Module that contains necessary subroutines to write abundances to an hdf5 file.

It is only included when the compilerflag "USE_HDF5" is set. For more information about the hdf5 format see What is HDF5?. There is a tradeoff between having the data in the memory and making an IO operation. Therefore, each output is first stored in a temporary array of a specific size (or chunksize) to prevent too much IO going on.

Remarks: It is recommended, that the chunk sizes should be around the size of 1MB, however, here are written many 1d real(double) arrays and 1MB would be way more than storing the whole simulation temporary. Therefore the chunk sizes are smaller (in the order of a couple of hundreds).

Author: Moritz Reichert

Date: 28.01.21

Function/Subroutine Documentation

◆ create_1d_dataset()

integer(hsize_t) function, private hdf5_module::create_1d_dataset	(	character(len=*), intent(in)	dsetname,
		integer(hid_t), intent(in)	group_id
	)

private

Gets a dataset name and creates it.

Creates a 1d dataset in the hdf5 and returns its dataset ID.

Author: Moritz Reichert

Date: 28.01.21

Parameters

[in]	dsetname	Name of the dataset
[in]	group_id	Group identifier

Returns: Dataset ID of the entry

Definition at line 1397 of file hdf5_module.f90.

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◆ create_1d_int_dataset()

integer(hsize_t) function, private hdf5_module::create_1d_int_dataset	(	character(len=*), intent(in)	dsetname,
		integer(hid_t), intent(in)	group_id
	)

private

Gets a dataset name and creates an integer dataset.

Creates a 1d dataset in the hdf5 and returns its dataset ID.

Author: Moritz Reichert

Date: 28.01.21

Parameters

[in]	dsetname	Name of the dataset
[in]	group_id	Group identifier

Returns: Dataset ID of the entry

Definition at line 1459 of file hdf5_module.f90.

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◆ create_constant_1d_arrays()

subroutine, private hdf5_module::create_constant_1d_arrays	(	integer, intent(in)	length,
		real(r_kind), dimension(length), intent(in)	data,
		character(len=*), intent(in)	dsetname,
		integer(hid_t)	group_id
	)

private

Create a hdf5 entry with constant values.

This is used for e.g., the flows

Author: Moritz Reichert

Date: 28.01.21

Parameters

[in]	length	ID of the dataset
[in]	data	Data values
[in]	dsetname	Name of the dataset
	group_id	ID of the group

Definition at line 1576 of file hdf5_module.f90.

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◆ create_constant_1d_int_arrays()

subroutine, private hdf5_module::create_constant_1d_int_arrays	(	integer, intent(in)	length,
		integer, dimension(length), intent(in)	data,
		character(len=*), intent(in)	dsetname,
		integer(hid_t)	group_id
	)

private

Create a hdf5 entry with constant values.

This is used for mass number, proton number, and neutron number.

Author: Moritz Reichert

Date: 28.01.21

Parameters

[in]	length	ID of the dataset
[in]	data	Data values
[in]	dsetname	Name of the dataset
	group_id	ID of the group

Definition at line 1519 of file hdf5_module.f90.

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◆ extend_1d_dataset()

subroutine, private hdf5_module::extend_1d_dataset	(	integer(hid_t), intent(in)	dset_id,
		real(r_kind), dimension(chunksize), intent(in)	value,
		integer, intent(in)	in_size,
		integer, intent(in)	chunksize
	)

private

Extend a previously created 1D - dataset.

The necessary input is the value and the id of the dataset only.

Author: Moritz Reichert

Date: 28.01.21

Parameters

[in]	chunksize	Size of the amount of variables written
[in]	value	New value that will get appended
[in]	dset_id	ID of the dataset
[in]	in_size	New size of the array

Definition at line 1634 of file hdf5_module.f90.

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◆ extend_1d_int_dataset()

subroutine, private hdf5_module::extend_1d_int_dataset	(	integer(hid_t), intent(in)	dset_id,
		integer, dimension(chunksize), intent(in)	value,
		integer, intent(in)	in_size,
		integer, intent(in)	chunksize
	)

private

Extend a previously created 1D integer - dataset.

The necessary input is the value and the id of the dataset only.

Author: Moritz Reichert

Date: 28.01.21

Parameters

[in]	chunksize	Size of the amount of variables written
[in]	value	New value that will get appended
[in]	dset_id	ID of the dataset
[in]	in_size	New size of the array

Definition at line 1692 of file hdf5_module.f90.

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◆ extend_av_timescales()

subroutine, public hdf5_module::extend_av_timescales	(	real(r_kind), intent(in)	time,
		real(r_kind), intent(in)	tau_ga,
		real(r_kind), intent(in)	tau_ag,
		real(r_kind), intent(in)	tau_ng,
		real(r_kind), intent(in)	tau_gn,
		real(r_kind), intent(in)	tau_pg,
		real(r_kind), intent(in)	tau_gp,
		real(r_kind), intent(in)	tau_np,
		real(r_kind), intent(in)	tau_pn,
		real(r_kind), intent(in)	tau_an,
		real(r_kind), intent(in)	tau_na,
		real(r_kind), intent(in)	tau_ap,
		real(r_kind), intent(in)	tau_pa,
		real(r_kind), intent(in)	tau_beta,
		real(r_kind), intent(in)	tau_alpha,
		real(r_kind), intent(in)	tau_nfiss,
		real(r_kind), intent(in)	tau_sfiss,
		real(r_kind), intent(in)	tau_bfiss
	)

Subroutine to write the average timescales (1/s) into the hdf5.

Author: Moritz Reichert

Date: 5.02.21

Parameters

[in]	time	Time [s]
[in]	tau_np	Timescales [1/s]
[in]	tau_pa	Timescales [1/s]
[in]	tau_alpha	Timescales [1/s]
[in]	tau_bfiss	Timescales [1/s]

Definition at line 1750 of file hdf5_module.f90.

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◆ extend_engen()

subroutine, public hdf5_module::extend_engen	(	real(r_kind), intent(in)	time,
		real(r_kind), intent(in)	engen_tot,
		real(r_kind), intent(in)	heat,
		real(r_kind), intent(in)	engen_ng_gn,
		real(r_kind), intent(in)	engen_pg_gp,
		real(r_kind), intent(in)	engen_ag_ga,
		real(r_kind), intent(in)	engen_np_pn,
		real(r_kind), intent(in)	engen_an_na,
		real(r_kind), intent(in)	engen_ap_pa,
		real(r_kind), intent(in)	engen_beta,
		real(r_kind), intent(in)	engen_fiss,
		real(r_kind), dimension(net_size), intent(in)	det_bet_engen,
		real(r_kind), dimension(net_size), intent(in)	det_ag_engen,
		real(r_kind), dimension(net_size), intent(in)	det_pg_engen,
		real(r_kind), dimension(net_size), intent(in)	det_ng_engen,
		real(r_kind), dimension(net_size), intent(in)	det_pn_engen,
		real(r_kind), dimension(net_size), intent(in)	det_ap_engen,
		real(r_kind), dimension(net_size), intent(in)	det_an_engen,
		real(r_kind), dimension(net_size), intent(in)	det_other_engen,
		real(r_kind), dimension(net_size), intent(in)	det_fiss_engen,
		real(r_kind), dimension(net_size), intent(in)	det_tot_engen,
		logical, intent(in)	include_decay
	)

Subroutine to write the energy generation per reaction type.

Author: Moritz Reichert

Date: 22.03.21

Parameters

[in]	time	Time [s]
[in]	engen_pg_gp	Energy generation [erg/g/s]
[in]	engen_an_na	Energy generation [erg/g/s]
[in]	engen_fiss	Energy generation [erg/g/s]
[in]	det_fiss_engen	Energy generation [erg/g/s]
[in]	det_tot_engen	Energy generation [erg/g/s]
[in]	include_decay	Write engen_decay_parents?

Definition at line 657 of file hdf5_module.f90.

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◆ extend_flow()

subroutine, public hdf5_module::extend_flow	(	real(r_kind), intent(in)	time,
		real(r_kind), intent(in)	temp,
		real(r_kind), intent(in)	dens,
		type(flow_vector), dimension(n_flows), intent(in)	flow,
		integer, intent(in)	n_flows,
		real(r_kind), dimension(net_size), intent(in)	Y
	)

Extend the flow in the file With every call a new group is created and the flows are written in this group. The group is named after the calls (the third call is then located in flows/3)

Parameters

[in]	time	Value of the time
[in]	temp	Value of the time
[in]	dens	Value of the time
[in]	n_flows	Maximum number of flows
[in]	flow	Array with already calculated flows
[in]	y	Array with abundances

Definition at line 761 of file hdf5_module.f90.

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◆ extend_hdf5_y()

subroutine, private hdf5_module::extend_hdf5_y	(	integer(hid_t), intent(in)	dset_id,
		real(r_kind), dimension(nr_nuc,chunksize), intent(in)	Y_array,
		integer, intent(in)	nr_nuc,
		integer, intent(in)	old_size,
		integer, intent(in)	chunksize
	)

private

Extend the Y dataset for the net timestep.

The dimension of this is given by global_class::net_size and the current iteration iter.

See also: extend_1d_dataset, extend_1d_int_dataset

Author: Moritz Reichert

Date: 28.01.21

Parameters

[in]	dset_id	Dataset identifier
[in]	nr_nuc	Amount of abundances
[in]	old_size	Old length of arrays
[in]	chunksize	Size of the chunk
[in]	y_array	Abundance array to store

Definition at line 2045 of file hdf5_module.f90.

◆ extend_mainout()

subroutine, public hdf5_module::extend_mainout	(	integer, intent(in)	cnt,
		real(r_kind), intent(in)	time,
		real(r_kind), intent(in)	temp,
		real(r_kind), intent(in)	dens,
		real(r_kind), intent(in)	entr,
		real(r_kind), intent(in)	rad,
		real(r_kind), dimension(net_size), intent(in)	Y
	)

Write the mainout data to the hdf5.

This will write the iteration, time (s), temperature (GK), density (g/ccm), entropy(kB/nuc), radius (km), Ye, Yn, Yp, Ya, Ylight, Yheavy, abar, and zbar.

Author: Moritz Reichert

Date: 5.02.21

Parameters

[in]	cnt	Iteration count
[in]	time	Time [s]
[in]	temp	Temperature [GK]
[in]	dens	Density [g/ccm]
[in]	entr	Entropy [kB/nuc]
[in]	rad	Radius [km]
[in]	y	Abundances

Definition at line 1916 of file hdf5_module.f90.

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◆ extend_nu_loss_gain()

subroutine, public hdf5_module::extend_nu_loss_gain	(	real(r_kind), intent(in)	time,
		real(r_kind), intent(in)	temp,
		real(r_kind), intent(in)	dens,
		real(r_kind), intent(in)	rad,
		real(r_kind), intent(in)	the,
		real(r_kind), intent(in)	heat,
		real(r_kind), intent(in)	bet
	)

Write neutrino gain and loss.

These values are stored in a separate group (called snapshots) that is initialized in init_hdf5_module.

Author: Moritz Reichert

Date: 12.04.23

Parameters

[in]	time	Time [s]
[in]	temp	Temperature [GK]
[in]	dens	Density [g/cm^3]
[in]	rad	Radius [km]
[in]	the	Neutrino gain/loss thermal [MeV/baryon/s]
[in]	heat	Neutrino gain/loss heating [MeV/baryon/s]
[in]	bet	Neutrino gain/loss beta decay [MeV/baryon/s]

Definition at line 414 of file hdf5_module.f90.

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◆ extend_snaps()

subroutine, public hdf5_module::extend_snaps	(	real(r_kind), intent(in)	time,
		real(r_kind), dimension(net_size), intent(in)	Y_array
	)

Write abundances and time into the hdf5 file.

These values are stored in a separate group (called snapshots) that is initialized in init_hdf5_module.

Author: Moritz Reichert

Date: 5.02.21

Parameters

[in]	y_array	Abundance to store
[in]	time	Time [s]

Definition at line 1865 of file hdf5_module.f90.

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◆ extend_track_nuclei()

subroutine, public hdf5_module::extend_track_nuclei	(	real(r_kind), intent(in)	time,
		real(r_kind), dimension(net_size), intent(in)	Y_array
	)

Write tracked abundances and time into the hdf5 file.

These values are stored in a separate group (called tracked_nuclei) that is initialized in init_hdf5_module.

Author: Moritz Reichert

Date: 5.02.21

Parameters

[in]	y_array	Abundance to store
[in]	time	Time [s]

Definition at line 1806 of file hdf5_module.f90.

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◆ hdf5_module_finalize()

subroutine, public hdf5_module::hdf5_module_finalize

Finalize the hdf5 module.

This subroutine closes all datasets, dataspaces, files and other things.

Author: Moritz Reichert

Date: 28.01.21

Definition at line 2090 of file hdf5_module.f90.

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◆ init_av_timescales()

subroutine, private hdf5_module::init_av_timescales

private

Initialize the timescales hdf5 group.

This subroutine creates a timescales group and creates the dataspaces for all included timescales and the time.

Definition at line 1130 of file hdf5_module.f90.

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◆ init_engen()

subroutine, private hdf5_module::init_engen ( logical, intent(in) include_decay )

private

Initialize energy generation output.

Parameters

[in] include_decay Flag that determines if decay energy per parent is written

Definition at line 477 of file hdf5_module.f90.

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◆ init_flow()

subroutine, private hdf5_module::init_flow

private

Initialize the flow output.

Definition at line 366 of file hdf5_module.f90.

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◆ init_hdf5_module()

subroutine, public hdf5_module::init_hdf5_module

Initialize the hdf5 module.

Create the file and the datasets. Furthermore, initialize arrays.

Author: Moritz Reichert

Date: 28.01.21

Definition at line 292 of file hdf5_module.f90.

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◆ init_mainout()

subroutine, private hdf5_module::init_mainout

private

Initialize the mainout hdf5 group.

This subroutine creates a mainout group and creates the dataspaces for all included quantities.

Definition at line 987 of file hdf5_module.f90.

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◆ init_nu_loss_gain()

subroutine, private hdf5_module::init_nu_loss_gain

private

Initialize neutrino loss/gain output.

Definition at line 382 of file hdf5_module.f90.

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◆ init_snaps()

subroutine, private hdf5_module::init_snaps

private

Initialize the snapshot hdf5 group.

This subroutine creates a snapshot group and writes mass number proton number and neutron number into it. Furthermore, it creates a dataspace for the abundances and the time. In addition a array that stores the abundances is initialized. This array is used to create larger chunks and reduce the IO when writing to the file on the cost of memory usage.

Definition at line 883 of file hdf5_module.f90.

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◆ init_track_nuclei()

subroutine, private hdf5_module::init_track_nuclei

private

Initialize the tracked_nuclei hdf5 group.

This subroutine creates a tracked_nuclei group and creates the dataspaces for all included abundances and the time. Furthermore, it allocates a array to store the abundances over several iterations.

Definition at line 1034 of file hdf5_module.f90.

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◆ write_av_timescales()

subroutine, private hdf5_module::write_av_timescales

private

Write average timescales and time into the hdf5 file.

These values are stored in a separate group (called timescales) that is initialized in init_hdf5_module.

Author: Moritz Reichert

Date: 5.02.21

Definition at line 1783 of file hdf5_module.f90.

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◆ write_engen()

subroutine, private hdf5_module::write_engen ( logical, intent(in) include_decay )

private

Write energy generations and time into the hdf5 file.

These values are stored in a separate group (called energy) that is initialized in init_hdf5_module.

Author: Moritz Reichert

Date: 22.03.21

Parameters

[in] include_decay Write engen_decay?

Definition at line 721 of file hdf5_module.f90.

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◆ write_finab()

subroutine, public hdf5_module::write_finab ( real(r_kind), dimension(net_size), intent(in) Y )

Write final abundances into hdf5 file.

This routine writes the final abundances of all nuclei (group:finab/finab), the final abundances summed over mass number (group:finab/finabsum), and the final abundances summed over equal proton numbers (group:finab/finabelem). These entries are similar to the ascii version the output (finabelem.dat,..)

Author: M. Reichert

Date: 05.03.21

Parameters

[in] y Abundances

Definition at line 1216 of file hdf5_module.f90.

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◆ write_mainout_data()

subroutine, private hdf5_module::write_mainout_data

private

Write the mainout data into a file.

When this subroutine is called depends on the chunk size.

Author: Moritz Reichert

Date: 09.02.21

Definition at line 1984 of file hdf5_module.f90.

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◆ write_nu_loss_gain()

subroutine, private hdf5_module::write_nu_loss_gain

private

Write the neutrino loss/gain into the hdf5 file.

These values are stored in a separate group (called nu_loss_gain) that is initialized in init_hdf5_module.

Author: Moritz Reichert

Date: 12.04.23

Definition at line 453 of file hdf5_module.f90.

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◆ write_snaps()

subroutine, private hdf5_module::write_snaps

private

Write the abundances of all nuclei into a file.

When this subroutine is called depends on the chunk size.

Author: Moritz Reichert

Date: 09.02.21

Definition at line 1890 of file hdf5_module.f90.

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◆ write_track_data()

subroutine, private hdf5_module::write_track_data

private

Write the abundances of track nuclei into a file.

When this subroutine is called depends on the chunk size.

Author: Moritz Reichert

Date: 09.02.21

Definition at line 1838 of file hdf5_module.f90.

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◆ write_units()

subroutine, private hdf5_module::write_units

private

Write the units of the individual entries into the hdf5 file.

For example:
Temperature - GK
Entropy - kB/nuc

Note: This subroutine is never used

Author: Moritz Reichert

Date: 28.01.21

Definition at line 1162 of file hdf5_module.f90.

Variable Documentation

◆ chunk_counter_en

integer, private hdf5_module::chunk_counter_en = 0

private

How full is the chunk already?

Definition at line 178 of file hdf5_module.f90.

◆ chunk_counter_mainout

integer, private hdf5_module::chunk_counter_mainout = 0

private

How full is the chunk already?

Definition at line 80 of file hdf5_module.f90.

◆ chunk_counter_nuloss

integer, private hdf5_module::chunk_counter_nuloss = 0

private

How full is the chunk already?

Definition at line 226 of file hdf5_module.f90.

◆ chunk_counter_snaps

integer, private hdf5_module::chunk_counter_snaps = 0

private

How full is the chunk already?

Definition at line 57 of file hdf5_module.f90.

◆ chunk_counter_track

integer, private hdf5_module::chunk_counter_track = 0

private

How full is the chunk already?

Definition at line 137 of file hdf5_module.f90.

◆ chunk_counter_ts

integer, private hdf5_module::chunk_counter_ts = 0

private

How full is the chunk already?

Definition at line 156 of file hdf5_module.f90.

◆ chunk_size_en

integer, parameter, private hdf5_module::chunk_size_en =500

private

Chunk size.

Definition at line 179 of file hdf5_module.f90.

◆ chunk_size_mainout

integer, parameter, private hdf5_module::chunk_size_mainout =500

private

Chunk size.

Definition at line 81 of file hdf5_module.f90.

◆ chunk_size_nuloss

integer, parameter, private hdf5_module::chunk_size_nuloss =500

private

Chunk size.

Definition at line 227 of file hdf5_module.f90.

◆ chunk_size_snaps

integer, parameter, private hdf5_module::chunk_size_snaps =200

private

Chunk size.

Definition at line 58 of file hdf5_module.f90.

◆ chunk_size_track

integer, parameter, private hdf5_module::chunk_size_track =500

private

Chunk size.

Definition at line 138 of file hdf5_module.f90.

◆ chunk_size_ts

integer, parameter, private hdf5_module::chunk_size_ts =500

private

Chunk size.

Definition at line 157 of file hdf5_module.f90.

◆ chunk_store_en

real(r_kind), dimension(chunk_size_en,11), private hdf5_module::chunk_store_en

private

Temporary storage for energy generation.

Definition at line 180 of file hdf5_module.f90.

◆ chunk_store_en_ag

real(r_kind), dimension(:,:), allocatable, private hdf5_module::chunk_store_en_ag

private

Definition at line 182 of file hdf5_module.f90.

◆ chunk_store_en_an

real(r_kind), dimension(:,:), allocatable, private hdf5_module::chunk_store_en_an

private

Definition at line 182 of file hdf5_module.f90.

◆ chunk_store_en_ap

real(r_kind), dimension(:,:), allocatable, private hdf5_module::chunk_store_en_ap

private

Definition at line 182 of file hdf5_module.f90.

◆ chunk_store_en_bet

real(r_kind), dimension(:,:), allocatable, private hdf5_module::chunk_store_en_bet

private

Definition at line 182 of file hdf5_module.f90.

◆ chunk_store_en_fiss

real(r_kind), dimension(:,:), allocatable, private hdf5_module::chunk_store_en_fiss

private

Definition at line 182 of file hdf5_module.f90.

◆ chunk_store_en_ng

real(r_kind), dimension(:,:), allocatable, private hdf5_module::chunk_store_en_ng

private

Definition at line 182 of file hdf5_module.f90.

◆ chunk_store_en_other

real(r_kind), dimension(:,:), allocatable, private hdf5_module::chunk_store_en_other

private

Definition at line 182 of file hdf5_module.f90.

◆ chunk_store_en_pg

real(r_kind), dimension(:,:), allocatable, private hdf5_module::chunk_store_en_pg

private

Definition at line 182 of file hdf5_module.f90.

◆ chunk_store_en_pn

real(r_kind), dimension(:,:), allocatable, private hdf5_module::chunk_store_en_pn

private

Definition at line 182 of file hdf5_module.f90.

◆ chunk_store_en_tot

real(r_kind), dimension(:,:), allocatable, private hdf5_module::chunk_store_en_tot

private

Definition at line 182 of file hdf5_module.f90.

◆ chunk_store_int_mainout

integer, dimension(chunk_size_mainout), private hdf5_module::chunk_store_int_mainout

private

Storage for integers in chunk which is later written to the file.

Definition at line 85 of file hdf5_module.f90.

◆ chunk_store_mainout

real(r_kind), dimension(chunk_size_mainout,13), private hdf5_module::chunk_store_mainout

private

Storage for the chunk which is later written to the file.

Definition at line 82 of file hdf5_module.f90.

◆ chunk_store_nuloss_bet

real(r_kind), dimension(chunk_size_nuloss), private hdf5_module::chunk_store_nuloss_bet

private

Definition at line 228 of file hdf5_module.f90.

◆ chunk_store_nuloss_dens

real(r_kind), dimension(chunk_size_nuloss), private hdf5_module::chunk_store_nuloss_dens

private

Definition at line 228 of file hdf5_module.f90.

◆ chunk_store_nuloss_heat

real(r_kind), dimension(chunk_size_nuloss), private hdf5_module::chunk_store_nuloss_heat

private

Definition at line 228 of file hdf5_module.f90.

◆ chunk_store_nuloss_nut

real(r_kind), dimension(chunk_size_nuloss), private hdf5_module::chunk_store_nuloss_nut

private

Definition at line 228 of file hdf5_module.f90.

◆ chunk_store_nuloss_rad

real(r_kind), dimension(chunk_size_nuloss), private hdf5_module::chunk_store_nuloss_rad

private

Definition at line 228 of file hdf5_module.f90.

◆ chunk_store_nuloss_t

real(r_kind), dimension(chunk_size_nuloss), private hdf5_module::chunk_store_nuloss_t

private

Definition at line 228 of file hdf5_module.f90.

◆ chunk_store_nuloss_temp

real(r_kind), dimension(chunk_size_nuloss), private hdf5_module::chunk_store_nuloss_temp

private

Definition at line 228 of file hdf5_module.f90.

◆ chunk_store_nuloss_the

real(r_kind), dimension(chunk_size_nuloss), private hdf5_module::chunk_store_nuloss_the

private

Definition at line 228 of file hdf5_module.f90.

◆ chunk_store_snaps_time

real(r_kind), dimension(chunk_size_snaps), private hdf5_module::chunk_store_snaps_time

private

Storage for the chunk which is later written to the file.

Definition at line 59 of file hdf5_module.f90.

◆ chunk_store_snaps_y

real(r_kind), dimension(:,:), allocatable, private hdf5_module::chunk_store_snaps_y

private

Storage for the chunk which is later written to the file.

Definition at line 62 of file hdf5_module.f90.

◆ chunk_store_track

real(r_kind), dimension(:,:), allocatable, private hdf5_module::chunk_store_track

private

Temporary storage for tracked nuclei.

Definition at line 139 of file hdf5_module.f90.

◆ chunk_store_ts

real(r_kind), dimension(chunk_size_ts,18), private hdf5_module::chunk_store_ts

private

Temporary storage for average timescales.

Definition at line 158 of file hdf5_module.f90.

◆ crp_list

integer(hid_t), private hdf5_module::crp_list

private

Dataset creation property identifier.

Definition at line 48 of file hdf5_module.f90.

◆ dataspace

integer(hid_t), private hdf5_module::dataspace

private

Dataspace identifier.

Definition at line 47 of file hdf5_module.f90.

◆ dims_1d

integer(hsize_t), dimension(1), private hdf5_module::dims_1d =(/1/)

private

Helper variable to specify 1 dimension.

Definition at line 46 of file hdf5_module.f90.

◆ dims_track

integer(hsize_t), dimension(1:2), private hdf5_module::dims_track

private

Array dimensions.

Definition at line 146 of file hdf5_module.f90.

◆ dims_y

integer(hsize_t), dimension(1:2), private hdf5_module::dims_y

private

Array dimensions (net_size)

Definition at line 69 of file hdf5_module.f90.

◆ dset_id_y

integer(hid_t), private hdf5_module::dset_id_y

private

Dataset identifier.

Definition at line 67 of file hdf5_module.f90.

◆ dsetname_u

character(len=*), parameter, private hdf5_module::dsetname_u = "Units"

private

Name of the units dataset.

Definition at line 43 of file hdf5_module.f90.

◆ dsetname_y

character(len=*), parameter, private hdf5_module::dsetname_y = "Y"

private

Name of the dataset.

Definition at line 68 of file hdf5_module.f90.

◆ en_det_ag_id

integer(hid_t), private hdf5_module::en_det_ag_id

private

Definition at line 205 of file hdf5_module.f90.

◆ en_det_ag_name

character(len=14), private hdf5_module::en_det_ag_name ="detailed (a,g)"

private

Definition at line 199 of file hdf5_module.f90.

◆ en_det_an_id

integer(hid_t), private hdf5_module::en_det_an_id

private

Definition at line 205 of file hdf5_module.f90.

◆ en_det_an_name

character(len=14), private hdf5_module::en_det_an_name ="detailed (a,n)"

private

Definition at line 199 of file hdf5_module.f90.

◆ en_det_ap_id

integer(hid_t), private hdf5_module::en_det_ap_id

private

Definition at line 205 of file hdf5_module.f90.

◆ en_det_ap_name

character(len=14), private hdf5_module::en_det_ap_name ="detailed (a,p)"

private

Definition at line 199 of file hdf5_module.f90.

◆ en_det_bet_id

integer(hid_t), private hdf5_module::en_det_bet_id

private

Definition at line 205 of file hdf5_module.f90.

◆ en_det_bet_name

character(len=14), private hdf5_module::en_det_bet_name ="detailed decay"

private

Definition at line 199 of file hdf5_module.f90.

◆ en_det_fiss_id

integer(hid_t), private hdf5_module::en_det_fiss_id

private

Definition at line 205 of file hdf5_module.f90.

◆ en_det_fiss_name

character(len=14), private hdf5_module::en_det_fiss_name ="detailed fiss "

private

Definition at line 199 of file hdf5_module.f90.

◆ en_det_ng_id

integer(hid_t), private hdf5_module::en_det_ng_id

private

Definition at line 205 of file hdf5_module.f90.

◆ en_det_ng_name

character(len=14), private hdf5_module::en_det_ng_name ="detailed (n,g)"

private

Definition at line 199 of file hdf5_module.f90.

◆ en_det_other_id

integer(hid_t), private hdf5_module::en_det_other_id

private

Definition at line 205 of file hdf5_module.f90.

◆ en_det_other_name

character(len=14), private hdf5_module::en_det_other_name ="detailed other"

private

Definition at line 199 of file hdf5_module.f90.

◆ en_det_pg_id

integer(hid_t), private hdf5_module::en_det_pg_id

private

Definition at line 205 of file hdf5_module.f90.

◆ en_det_pg_name

character(len=14), private hdf5_module::en_det_pg_name ="detailed (p,g)"

private

Definition at line 199 of file hdf5_module.f90.

◆ en_det_pn_id

integer(hid_t), private hdf5_module::en_det_pn_id

private

Definition at line 205 of file hdf5_module.f90.

◆ en_det_pn_name

character(len=14), private hdf5_module::en_det_pn_name ="detailed (p,n)"

private

Definition at line 199 of file hdf5_module.f90.

◆ en_det_tot_id

integer(hid_t), private hdf5_module::en_det_tot_id

private

Definition at line 205 of file hdf5_module.f90.

◆ en_det_tot_name

character(len=14), private hdf5_module::en_det_tot_name ="detailed total"

private

Definition at line 199 of file hdf5_module.f90.

◆ en_dset_id_t

integer(hid_t), private hdf5_module::en_dset_id_t

private

Dataset identifier.

Definition at line 190 of file hdf5_module.f90.

◆ en_dsetname_t

character(len=*), parameter, private hdf5_module::en_dsetname_t = "time"

private

Name of the dataset.

Definition at line 189 of file hdf5_module.f90.

◆ en_group_id

integer(hid_t), private hdf5_module::en_group_id

private

The ID of the group.

Definition at line 174 of file hdf5_module.f90.

◆ en_names

character(len=11), dimension(10), private hdf5_module::en_names = (/"engen_tot ","S_src ","engen_ng_gn","engen_pg_gp","engen_ag_ga", "engen_np_pn","engen_an_na","engen_ap_pa","engen_beta ", "engen_fiss "/)

private

Name of the energy generations.

Definition at line 192 of file hdf5_module.f90.

◆ en_reac_ids

integer(hid_t), dimension(10), private hdf5_module::en_reac_ids

private

Dataset identifier.

Definition at line 197 of file hdf5_module.f90.

◆ file_id

integer(hid_t), private hdf5_module::file_id

private

File identifier.

Definition at line 37 of file hdf5_module.f90.

◆ finab_group_id

integer(hid_t), private hdf5_module::finab_group_id

private

The ID of the group.

Definition at line 264 of file hdf5_module.f90.

◆ flow_dset_id_t

integer(hid_t), private hdf5_module::flow_dset_id_t

private

Dataset identifier.

Definition at line 218 of file hdf5_module.f90.

◆ flow_dsetname_t

character(len=*), parameter, private hdf5_module::flow_dsetname_t = "time"

private

Name of the dataset.

Definition at line 217 of file hdf5_module.f90.

◆ flow_group_id

integer(hid_t), private hdf5_module::flow_group_id

private

The ID of the group.

Definition at line 212 of file hdf5_module.f90.

◆ hdf5_filename

character(len=20), private hdf5_module::hdf5_filename ="WinNet_data.h5"

private

Name of the hdf5 file.

Definition at line 38 of file hdf5_module.f90.

◆ hdf5_output

logical, private hdf5_module::hdf5_output =.False.

private

Definition at line 41 of file hdf5_module.f90.

◆ iter_en

integer, private hdf5_module::iter_en = 0

private

Iteration count, how often was already extended to the datasets?

Definition at line 175 of file hdf5_module.f90.

◆ iter_flow

integer, private hdf5_module::iter_flow = 0

private

Iteration count, how often was already extended to the datasets?

Definition at line 213 of file hdf5_module.f90.

◆ iter_mainout

integer, private hdf5_module::iter_mainout = 0

private

Iteration count, how often was already extended to the datasets?

Definition at line 77 of file hdf5_module.f90.

◆ iter_nuloss

integer, private hdf5_module::iter_nuloss = 0

private

Iteration count, how often was already extended to the datasets?

Definition at line 223 of file hdf5_module.f90.

◆ iter_snaps

integer, private hdf5_module::iter_snaps = 0

private

Iteration count, how often was already extended to the datasets?

Definition at line 54 of file hdf5_module.f90.

◆ iter_tracked

integer, private hdf5_module::iter_tracked = 0

private

Iteration count, how often was already extended to the datasets?

Definition at line 134 of file hdf5_module.f90.

◆ iter_ts

integer, private hdf5_module::iter_ts = 0

private

Iteration count, how often was already extended to the datasets?

Definition at line 153 of file hdf5_module.f90.

◆ mainout_dset_id_abar

integer(hid_t), private hdf5_module::mainout_dset_id_abar

private

Dataset identifier.

Definition at line 126 of file hdf5_module.f90.

◆ mainout_dset_id_dens

integer(hid_t), private hdf5_module::mainout_dset_id_dens

private

Dataset identifier.

Definition at line 99 of file hdf5_module.f90.

◆ mainout_dset_id_entr

integer(hid_t), private hdf5_module::mainout_dset_id_entr

private

Dataset identifier.

Definition at line 102 of file hdf5_module.f90.

◆ mainout_dset_id_iter

integer(hid_t), private hdf5_module::mainout_dset_id_iter

private

Dataset identifier.

Definition at line 90 of file hdf5_module.f90.

◆ mainout_dset_id_rad

integer(hid_t), private hdf5_module::mainout_dset_id_rad

private

Dataset identifier.

Definition at line 105 of file hdf5_module.f90.

◆ mainout_dset_id_t

integer(hid_t), private hdf5_module::mainout_dset_id_t

private

Dataset identifier.

Definition at line 93 of file hdf5_module.f90.

◆ mainout_dset_id_temp

integer(hid_t), private hdf5_module::mainout_dset_id_temp

private

Dataset identifier.

Definition at line 96 of file hdf5_module.f90.

◆ mainout_dset_id_ya

integer(hid_t), private hdf5_module::mainout_dset_id_ya

private

Dataset identifier.

Definition at line 117 of file hdf5_module.f90.

◆ mainout_dset_id_ye

integer(hid_t), private hdf5_module::mainout_dset_id_ye

private

Dataset identifier.

Definition at line 108 of file hdf5_module.f90.

◆ mainout_dset_id_yheavy

integer(hid_t), private hdf5_module::mainout_dset_id_yheavy

private

Dataset identifier.

Definition at line 123 of file hdf5_module.f90.

◆ mainout_dset_id_ylight

integer(hid_t), private hdf5_module::mainout_dset_id_ylight

private

Dataset identifier.

Definition at line 120 of file hdf5_module.f90.

◆ mainout_dset_id_yn

integer(hid_t), private hdf5_module::mainout_dset_id_yn

private

Dataset identifier.

Definition at line 111 of file hdf5_module.f90.

◆ mainout_dset_id_yp

integer(hid_t), private hdf5_module::mainout_dset_id_yp

private

Dataset identifier.

Definition at line 114 of file hdf5_module.f90.

◆ mainout_dset_id_zbar

integer(hid_t), private hdf5_module::mainout_dset_id_zbar

private

Dataset identifier.

Definition at line 129 of file hdf5_module.f90.

◆ mainout_dsetname_abar

character(len=*), parameter, private hdf5_module::mainout_dsetname_abar = "abar"

private

Name of the dataset.

Definition at line 125 of file hdf5_module.f90.

◆ mainout_dsetname_dens

character(len=*), parameter, private hdf5_module::mainout_dsetname_dens = "dens"

private

Name of the dataset.

Definition at line 98 of file hdf5_module.f90.

◆ mainout_dsetname_entr

character(len=*), parameter, private hdf5_module::mainout_dsetname_entr = "entr"

private

Name of the dataset.

Definition at line 101 of file hdf5_module.f90.

◆ mainout_dsetname_iter

character(len=*), parameter, private hdf5_module::mainout_dsetname_iter = "iteration"

private

Name of the dataset.

Definition at line 89 of file hdf5_module.f90.

◆ mainout_dsetname_rad

character(len=*), parameter, private hdf5_module::mainout_dsetname_rad = "rad"

private

Name of the dataset.

Definition at line 104 of file hdf5_module.f90.

◆ mainout_dsetname_t

character(len=*), parameter, private hdf5_module::mainout_dsetname_t = "time"

private

Name of the dataset.

Definition at line 92 of file hdf5_module.f90.

◆ mainout_dsetname_temp

character(len=*), parameter, private hdf5_module::mainout_dsetname_temp = "temp"

private

Name of the dataset.

Definition at line 95 of file hdf5_module.f90.

◆ mainout_dsetname_ya

character(len=*), parameter, private hdf5_module::mainout_dsetname_ya = "ya"

private

Name of the dataset.

Definition at line 116 of file hdf5_module.f90.

◆ mainout_dsetname_ye

character(len=*), parameter, private hdf5_module::mainout_dsetname_ye = "ye"

private

Name of the dataset.

Definition at line 107 of file hdf5_module.f90.

◆ mainout_dsetname_yheavy

character(len=*), parameter, private hdf5_module::mainout_dsetname_yheavy = "yheavy"

private

Name of the dataset.

Definition at line 122 of file hdf5_module.f90.

◆ mainout_dsetname_ylight

character(len=*), parameter, private hdf5_module::mainout_dsetname_ylight = "ylight"

private

Name of the dataset.

Definition at line 119 of file hdf5_module.f90.

◆ mainout_dsetname_yn

character(len=*), parameter, private hdf5_module::mainout_dsetname_yn = "yn"

private

Name of the dataset.

Definition at line 110 of file hdf5_module.f90.

◆ mainout_dsetname_yp

character(len=*), parameter, private hdf5_module::mainout_dsetname_yp = "yp"

private

Name of the dataset.

Definition at line 113 of file hdf5_module.f90.

◆ mainout_dsetname_zbar

character(len=*), parameter, private hdf5_module::mainout_dsetname_zbar = "zbar"

private

Name of the dataset.

Definition at line 128 of file hdf5_module.f90.

◆ mainout_group_id

integer(hid_t), private hdf5_module::mainout_group_id

private

The ID of the group.

Definition at line 76 of file hdf5_module.f90.

◆ maxdims

integer(hsize_t), dimension(1:2), private hdf5_module::maxdims

private

Maximum dimensions (later set to unlimited)

Definition at line 49 of file hdf5_module.f90.

◆ nuloss_dset_id_bet

integer(hid_t), private hdf5_module::nuloss_dset_id_bet

private

Dataset identifier.

Definition at line 254 of file hdf5_module.f90.

◆ nuloss_dset_id_dens

integer(hid_t), private hdf5_module::nuloss_dset_id_dens

private

Dataset identifier.

Definition at line 245 of file hdf5_module.f90.

◆ nuloss_dset_id_heat

integer(hid_t), private hdf5_module::nuloss_dset_id_heat

private

Dataset identifier.

Definition at line 260 of file hdf5_module.f90.

◆ nuloss_dset_id_nut

integer(hid_t), private hdf5_module::nuloss_dset_id_nut

private

Dataset identifier.

Definition at line 251 of file hdf5_module.f90.

◆ nuloss_dset_id_rad

integer(hid_t), private hdf5_module::nuloss_dset_id_rad

private

Dataset identifier.

Definition at line 248 of file hdf5_module.f90.

◆ nuloss_dset_id_t

integer(hid_t), private hdf5_module::nuloss_dset_id_t

private

Dataset identifier.

Definition at line 239 of file hdf5_module.f90.

◆ nuloss_dset_id_temp

integer(hid_t), private hdf5_module::nuloss_dset_id_temp

private

Dataset identifier.

Definition at line 242 of file hdf5_module.f90.

◆ nuloss_dset_id_the

integer(hid_t), private hdf5_module::nuloss_dset_id_the

private

Dataset identifier.

Definition at line 257 of file hdf5_module.f90.

◆ nuloss_dsetname_bet

character(len=*), parameter, private hdf5_module::nuloss_dsetname_bet = "nu_beta"

private

Name of the dataset.

Definition at line 253 of file hdf5_module.f90.

◆ nuloss_dsetname_dens

character(len=*), parameter, private hdf5_module::nuloss_dsetname_dens = "dens"

private

Name of the dataset.

Definition at line 244 of file hdf5_module.f90.

◆ nuloss_dsetname_heat

character(len=*), parameter, private hdf5_module::nuloss_dsetname_heat = "nu_heat"

private

Name of the dataset.

Definition at line 259 of file hdf5_module.f90.

◆ nuloss_dsetname_nut

character(len=*), parameter, private hdf5_module::nuloss_dsetname_nut = "nu_total"

private

Name of the dataset.

Definition at line 250 of file hdf5_module.f90.

◆ nuloss_dsetname_rad

character(len=*), parameter, private hdf5_module::nuloss_dsetname_rad = "rad"

private

Name of the dataset.

Definition at line 247 of file hdf5_module.f90.

◆ nuloss_dsetname_t

character(len=*), parameter, private hdf5_module::nuloss_dsetname_t = "time"

private

Name of the dataset.

Definition at line 238 of file hdf5_module.f90.

◆ nuloss_dsetname_temp

character(len=*), parameter, private hdf5_module::nuloss_dsetname_temp = "temp"

private

Name of the dataset.

Definition at line 241 of file hdf5_module.f90.

◆ nuloss_dsetname_the

character(len=*), parameter, private hdf5_module::nuloss_dsetname_the = "nu_thermal"

private

Name of the dataset.

Definition at line 256 of file hdf5_module.f90.

◆ nuloss_group_id

integer(hid_t), private hdf5_module::nuloss_group_id

private

The ID of the group.

Definition at line 222 of file hdf5_module.f90.

◆ snaps_dset_id_t

integer(hid_t), private hdf5_module::snaps_dset_id_t

private

Dataset identifier.

Definition at line 72 of file hdf5_module.f90.

◆ snaps_dsetname_t

character(len=*), parameter, private hdf5_module::snaps_dsetname_t = "time"

private

Name of the dataset.

Definition at line 71 of file hdf5_module.f90.

◆ snaps_group_id

integer(hid_t), private hdf5_module::snaps_group_id

private

The ID of the group.

Definition at line 53 of file hdf5_module.f90.

◆ track_group_id

integer(hid_t), private hdf5_module::track_group_id

private

The ID of the group.

Definition at line 133 of file hdf5_module.f90.

◆ tracked_abu_id

integer(hid_t), private hdf5_module::tracked_abu_id

private

Dataset identifier.

Definition at line 148 of file hdf5_module.f90.

◆ tracked_dset_id_t

integer(hid_t), private hdf5_module::tracked_dset_id_t

private

Dataset identifier.

Definition at line 144 of file hdf5_module.f90.

◆ tracked_dsetname_t

character(len=*), parameter, private hdf5_module::tracked_dsetname_t = "time"

private

Name of the dataset.

Definition at line 143 of file hdf5_module.f90.

◆ tracked_dsetname_y

character(len=*), parameter, private hdf5_module::tracked_dsetname_y = "Y"

private

Name of the dataset.

Definition at line 149 of file hdf5_module.f90.

◆ tracked_names

character(len=5), dimension(:), allocatable, private hdf5_module::tracked_names

private

Names of the tracked nuclei.

Definition at line 147 of file hdf5_module.f90.

◆ ts_dset_id_t

integer(hid_t), private hdf5_module::ts_dset_id_t

private

Dataset identifier.

Definition at line 163 of file hdf5_module.f90.

◆ ts_dsetname_t

character(len=*), parameter, private hdf5_module::ts_dsetname_t = "time"

private

Name of the dataset.

Definition at line 162 of file hdf5_module.f90.

◆ ts_group_id

integer(hid_t), private hdf5_module::ts_group_id

private

The ID of the group.

Definition at line 152 of file hdf5_module.f90.

◆ ts_names

character(len=9), dimension(17), private hdf5_module::ts_names = (/"tau_ga ","tau_ag ","tau_ng ","tau_gn ","tau_pg ","tau_gp ","tau_np ", "tau_pn ","tau_an ","tau_na ","tau_ap ","tau_pa ","tau_beta ","tau_alpha", "tau_nfiss","tau_sfiss","tau_bfiss"/)

private

Names of the timescales.

Definition at line 165 of file hdf5_module.f90.

◆ ts_reac_ids

integer(hid_t), dimension(17), private hdf5_module::ts_reac_ids

private

Dataset identifier.

Definition at line 170 of file hdf5_module.f90.

Functions/Subroutines

Variables

Detailed Description

Function/Subroutine Documentation

◆ create_1d_dataset()

◆ create_1d_int_dataset()

◆ create_constant_1d_arrays()

◆ create_constant_1d_int_arrays()

◆ extend_1d_dataset()

◆ extend_1d_int_dataset()

◆ extend_av_timescales()

◆ extend_engen()

◆ extend_flow()

◆ extend_hdf5_y()

◆ extend_mainout()

◆ extend_nu_loss_gain()

◆ extend_snaps()

◆ extend_track_nuclei()

◆ hdf5_module_finalize()

◆ init_av_timescales()

◆ init_engen()

◆ init_flow()

◆ init_hdf5_module()

◆ init_mainout()

◆ init_nu_loss_gain()

◆ init_snaps()

◆ init_track_nuclei()

◆ write_av_timescales()

◆ write_engen()

◆ write_finab()

◆ write_mainout_data()

◆ write_nu_loss_gain()

◆ write_snaps()

◆ write_track_data()

◆ write_units()

Variable Documentation

◆ chunk_counter_en

◆ chunk_counter_mainout

◆ chunk_counter_nuloss

◆ chunk_counter_snaps

◆ chunk_counter_track

◆ chunk_counter_ts

◆ chunk_size_en

◆ chunk_size_mainout

◆ chunk_size_nuloss

◆ chunk_size_snaps

◆ chunk_size_track

◆ chunk_size_ts

◆ chunk_store_en

◆ chunk_store_en_ag

◆ chunk_store_en_an

◆ chunk_store_en_ap

◆ chunk_store_en_bet

◆ chunk_store_en_fiss

◆ chunk_store_en_ng

◆ chunk_store_en_other

◆ chunk_store_en_pg

◆ chunk_store_en_pn

◆ chunk_store_en_tot

◆ chunk_store_int_mainout

◆ chunk_store_mainout

◆ chunk_store_nuloss_bet

◆ chunk_store_nuloss_dens

◆ chunk_store_nuloss_heat

◆ chunk_store_nuloss_nut

◆ chunk_store_nuloss_rad

◆ chunk_store_nuloss_t

◆ chunk_store_nuloss_temp

◆ chunk_store_nuloss_the

◆ chunk_store_snaps_time

◆ chunk_store_snaps_y

◆ chunk_store_track

◆ chunk_store_ts

◆ crp_list

◆ dataspace

◆ dims_1d

◆ dims_track

◆ dims_y

◆ dset_id_y

◆ dsetname_u